Developed
by Raghava's
Group
Research
Protein Structure
Prediction
PSSP:
Secondary Structure Prediction ->
This server allow to predict the secondary structure of protein's
from their amino acid sequence
APSSP:
Advanced Protein Secondary Structure Prediction
-> This server allow to predict the secondary structure of
protein's from their amino acid sequence with high accuracy. It
utilize the multiple alignment, neural network and MBR techniques.
APSSP2:
Advanced Protein Secondary Structure Prediction
-> This server allow to predict the secondary structure of
protein's from their amino acid sequence with high accuracy. It
utilize the multiple alignment, neural network and MBR techniques.
Protein
Structural Classes -> It predict
weather protein belong to class Alpha or Beta or Alpha+Beta or
Alpha/Beta
Protein
Sequence Analysis -> This server
allow user to analysis of protein sequence and present of analysis
in Graphical and Textual format.
RPFOLD:
Recognition of Protein Fold -> RPFOLD
server allows to predict top 5 similar fold in PDB (Protein
DataBank) for a ginen protein sequence (query)
BTeval:
Benchmarking of Beta Turn prediction
methos on-line via Internet
BetatTPred2:Prediction
of Beta Turns in Proteins using Neural Network and multiple
alignment techniques
BetaPred:
This
server allows to predict the beta turns in a protein from their
amino acid sequence. A user can predict the beta turn in their
sequence using existing statistical methods.
Immunological Methods
Ab/Ag
concentartion -> This web-server
allow to compute the endpoint titer and concentration of
Antibody(Ab) or Antigen(Ag) from ELISA data.
MHC
Class II binding peptide -> Matrix
Optimization Technique for Predicting MHC binding Core
MMBPred
Prediction of of MHC class I binders which can bind to wide range
of MHC alleles with high affinity. This server has potential to
develop sub-unit vaccine for large population.
ProPred1:
Prediction of MHC Class I binding peptide
-> The aim of this server is to predict MHC Class-I binding
regions in an antigen sequence
ProPred:
Prediction of MHC Class II binding peptide
-> The aim of this server is to predict MHC Class-II binding
regions in an antigen sequence
MHCBench
-> MHCBench is an interface developed for evaluating the Major
Histocompatibility Complex (MHC) binding peptide prediction
algorithms.
MHCBN:
A comprehensive database of MHC binding
and non-binding peptides. This is a curated database compiled from
literature.
Genomics &
Proteomics
FTG:
A web server for locating probable protein coding region in
nucleotide sequence using fourier tranform approach.
FTGPred:
A web server for predicting genes in a DNAsequence
Comp2DGel:
Comparison, management and access of 2D gel electrophoresis
DNASIZE:
Computation of DNA/Protein size ->
This web-server allow to compute the length of DNA or protein
fragments from its electropheric mobility using a graphical method
GWBLAST:
A genome wide blast server. It allow
user to search ther sequence against genome and proteome.
GWFASTA:
Genome
Wise Sequence Similarity Search using FASTA. It allow user to
search their sequence against sequenced genomes and their product
proteome.
Databases
PDRB:
Public Domain Resources in Biology ->
The aim of this project is to promote the development of public
domain biological resources
PDSB:
Public Domain Software in Biology ->
The aim of this project is to build the database of public domain
software in biology and to distribute these software on-line as
well as off-line.
PDWSB:
Public Domain Web Servers in Biology ->
PDWSB consists the information about web servers in biology
PDWPB:
Public Domain Web Pages in Biology ->
PDWPB consists the information about web pages in biology
FSGP:
Free Sodtware for General Purpose ->
The database contain computer software which are freely available
for non-comercial users
Genome
Database ->
We are maintaining all genome at IMTECH in order to provide Genome
wide BLAST search
Mirror Sites
OCA
Browser and Protein DataBank (PDB) ->
We are maintating mirror of Protein Databank, so user can dowload
any structure whose coordinate is known. OCA Browser allow user to
search the PDB by keyword and sequence similarity searh useing
FASTA
Computer Software
in Biology
Software
at EBI: European Bioinformatics
Institute (EBI) maintain repository of computer software in
molecular biology. EBI have more than 300 program (ftp://ftp.ebi.ac.uk/pub/software).
We are maintaing mirror of software at EBI on this site. Click
here to access these software.
Software
at Indiana University
: Indiana University is maintaining software in field of biology
since 1989. It maintain huge collection of software packages in
biology. We are maintaing mirror of their ftp site, so that user
can access or download these software from our ftp site (ftp://www.imtech.res.in/pub/mirror_sites/iubio)
General
Purpose Computer Software
GNU
Web Server: Free software foundation (FSF)
is promoting the development and use of free software in every
field of computer science. Their project is known as GNU project
and software developed under this project are available to public.
GNU
ftp Site: This site maintain mirror of
ftp site of GNU software. User can download software from our site
(ftp://www.imtech.res.in/pub/mirror_sites/gnuftp/).
PostgreSQL
Web Site: PostgreSQL is a sophisticated
Object-Relational DBMS, supporting almost all SQL constructs,
including subselects, transactions, and user-defined types and
functions (http://www.postgresql.org/).
It is the most advanced open-source database available anywhere. W
e maintain its mirror site so that user can access it from our
site (ftp://www.imtech.res.in:8080/).
PostgreSQL
ftp Site: PostgreSQL is a sophisticated
Object-Relational DBMS as describe above, we are maintaining
mirror of its ftp side. User can download it from our site (ftp://www.imtech.res.in/pub/mirror_sites/pgsql/).
SUN
Freeware Web Server: SUN systems
maintain free software. We are maintiang mirror site of their webs
server.
SUN
freeware ftp Site: This site maintain
mirror of ftp site of SUN freeware software. User can download
software from our site (ftp://www.imtech.res.in/pub/mirror_sites/sunfree/).
Misc.
LibInet:
Library on Internet -> LibInet allows
management of library resources via Internet. This package is
completely based on web technology and is suitable for wide area
network (e.g. Internet)
Blast
Search : This
server allow to search query protein sequence against non-redudant
database of protein sequences.
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